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1

Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics

Das, Abhiram, Schneider, Hannah, Burridge, James, Ascanio, Ana Karine Martinez, Wojciechowski, Tobias, Topp, Christopher N., Lynch, Jonathan P., Weitz, Joshua S., Bucksch, Alexander

Journal:

Year:

2015

Language:

english

File:

PDF, 4.03 MB

english, 2015

2

The virus of my virus is my friend: Ecological effects of virophage with alternative modes of coinfection

Taylor, Bradford P., Cortez, Michael H., Weitz, Joshua S.

Journal:

Journal of Theoretical Biology

Year:

2014

Language:

english

File:

PDF, 1.87 MB

english, 2014

3

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || APPENDIX B. Population Dynamics of Viruses and Microbes

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 526 KB

english, 2016

4

Dynamics of Indirectly Transmitted Infectious Diseases with

Richard I. Joh, Hao Wang, Howard Weiss, Joshua S. Weitz

Journal:

Bulletin of Mathematical Biology

Year:

2009

Language:

english

File:

PDF, 418 KB

english, 2009

5

MULTISCALE MODEL OF CRISPR-INDUCED COEVOLUTIONARY DYNAMICS: DIVERSIFICATION AT THE INTERFACE OF LAMARCK AND DARWIN

Lauren M. Childs, Nicole L. Held, Mark J. Young, Rachel J. Whitaker, Joshua S. Weitz

Journal:

Year:

2012

Language:

english

File:

PDF, 925 KB

english, 2012

6

The elemental composition of virus particles: implications for marine biogeochemical cycles

Jover, Luis F., Effler, T. Chad, Buchan, Alison, Wilhelm, Steven W., Weitz, Joshua S.

Journal:

Nature Reviews Microbiology

Year:

2014

Language:

english

File:

PDF, 1.16 MB

english, 2014

7

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

Lewis, Nathan E, Hixson, Kim K, Conrad, Tom M, Lerman, Joshua A, Charusanti, Pep, Polpitiya, Ashoka D, Adkins, Joshua N, Schramm, Gunnar, Purvine, Samuel O, Lopez-Ferrer, Daniel, Weitz, Karl K, Eils,

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.02 MB

english, 2010

8

Leaf Extraction and Analysis Framework Graphical User Interface: Segmenting and Analyzing the Structure of Leaf Veins and Areoles

Charles A. Price, Olga Symonova, Yuriy Mileyko, Troy Hilley and Joshua S. Weitz

Journal:

PLANT PHYSIOLOGY

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

9

An oscillating tragedy of the commons in replicator dynamics with game-environment feedback

Weitz, Joshua S., Eksin, Ceyhun, Paarporn, Keith, Brown, Sam P., Ratcliff, William C.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.05 MB

english, 2016

10

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || CHAPTER FIVE. Coevolutionary Dynamics of Viruses and Microbes

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 462 KB

english, 2016

11

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || APPENDIX C. Evolutionary Dynamics of Viruses or Microbes, but Not Both

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 92 KB

english, 2016

12

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || CHAPTER FOUR. Evolutionary Dynamics of Viruses or Microbes, but Not Both

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 485 KB

english, 2016

13

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || CHAPTER SIX. Ocean Viruses: On Their Abundance, Diversity, and Target Hosts

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 380 KB

english, 2016

14

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || Bibliography

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 154 KB

english, 2016

15

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || APPENDIX D. Ocean Viruses: On Their Abundance, Diversity, and Target Hosts

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 57 KB

english, 2016

16

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || APPENDIX A. Viral Life History Traits

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 201 KB

english, 2016

17

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || CHAPTER EIGHT. The Future of Quantitative Viral Ecology

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 69 KB

english, 2016

18

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || CHAPTER THREE. Population Dynamics of Viruses and Microbes

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 711 KB

english, 2016

19

Quantitative Viral Ecology (Dynamics of Viruses and Their Microbial Hosts) || CHAPTER SEVEN. Virus-Host Dynamics in a Complex Milieu

Weitz, Joshua S.

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

20

Lysis, lysogeny and virus–microbe ratios

Weitz, Joshua S., Beckett, Stephen J., Brum, Jennifer R., Cael, B. B., Dushoff, Jonathan

Journal:

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

21

A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments

Munson-McGee, Jacob H., Peng, Shengyun, Dewerff, Samantha, Stepanauskas, Ramunas, Whitaker, Rachel J., Weitz, Joshua S., Young, Mark J.

Journal:

The ISME Journal

Year:

2018

Language:

english

File:

PDF, 1002 KB

english, 2018

22

Quantitative Infection Dynamics of Cafeteria Roenbergensis Virus

Taylor, Bradford, Weitz, Joshua, Brussaard, Corina, Fischer, Matthias

Journal:

Year:

2018

Language:

english

File:

PDF, 407 KB

english, 2018

23

Heterogeneous viral strategies promote coexistence in virus-microbe systems

Gulbudak, Hayriye, Weitz, Joshua S.

Journal:

Journal of Theoretical Biology

Year:

2019

Language:

english

File:

PDF, 5.70 MB

english, 2019

24

A neutral metapopulation model of biodiversity in river networks

Rachata Muneepeerakul, Joshua S. Weitz, Simon A. Levin, Andrea Rinaldo, Ignacio Rodriguez-Iturbe

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 419 KB

english, 2007

25

Genomic fluidity: an integrative view of gene diversity within microbial populations

Andrey O Kislyuk, Bart Haegeman, Nicholas H Bergman, Joshua S Weitz

Journal:

Year:

2011

Language:

english

File:

PDF, 1.11 MB

english, 2011

26

A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data

Xingpeng Jiang, Joshua S. Weitz, Jonathan Dushoff

Journal:

Journal of Mathematical Biology

Year:

2012

Language:

english

File:

PDF, 707 KB

english, 2012

27

Alternative stable states in host–phage dynamics

Joshua S. Weitz, Jonathan Dushoff

Journal:

Theoretical Ecology

Year:

2008

Language:

english

File:

PDF, 285 KB

english, 2008

28

Dynamics of nutrient uptake strategies: lessons from the tortoise and the hare

Duncan N. L. Menge, Ford Ballantyne, Joshua S. Weitz

Journal:

Theoretical Ecology

Year:

2011

Language:

english

File:

PDF, 690 KB

english, 2011

29

Dangerous nutrients: Evolution of phytoplankton resource uptake subject to virus attack

Duncan N.L. Menge, Joshua S. Weitz

Journal:

Journal of Theoretical Biology

Year:

2009

Language:

english

File:

PDF, 502 KB

english, 2009

30

Size and scaling of predator–prey dynamics

Joshua S. Weitz, Simon A. Levin

Journal:

Ecology Letters

Year:

2006

Language:

english

File:

PDF, 326 KB

english, 2006

31

Evaluating scaling models in biology using hierarchical Bayesian approaches

Charles A. Price, Kiona Ogle, Ethan P. White, Joshua S. Weitz

Journal:

Ecology Letters

Year:

2009

Language:

english

File:

PDF, 1.38 MB

english, 2009

32

An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure

Ivana Gudelj, Joshua S. Weitz, Tom Ferenci, M. Claire Horner-Devine, Christopher J. Marx, Justin R. Meyer, Samantha E. Forde

Journal:

Ecology Letters

Year:

2010

Language:

english

File:

PDF, 332 KB

english, 2010

33

Scaling and structure of dicotyledonous leaf venation networks

Charles A. Price, Scott Wing, Joshua S. Weitz

Journal:

Ecology Letters

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

34

The metabolic theory of ecology: prospects and challenges for plant biology

Charles A. Price, James F. Gilooly, Andrew P. Allen, Joshua S. Weitz, Karl J. Niklas

Journal:

New Phytologist

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

35

Allometric covariation: a hallmark behavior of plants and leaves

Charles A. Price, Joshua S. Weitz

Journal:

New Phytologist

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

36

Bacterivorous grazers facilitate organic matter decomposition: a stoichiometric modeling approach

Hao Wang, Lin Jiang, Joshua S. Weitz

Journal:

FEMS Microbiology Ecology

Year:

2009

Language:

english

File:

PDF, 344 KB

english, 2009

37

An Algorithm-Independent Definition of Damage Spreading—Application to Directed Percolation

Haye Hinrichsen, Joshua S. Weitz, Eytan Domany

Journal:

Journal of Statistical Physics

Year:

1997

Language:

english

File:

PDF, 990 KB

english, 1997

38

Scale-dependence of resource-biodiversity relationships

Joshua S. Weitz, Daniel H. Rothman

Journal:

Journal of Theoretical Biology

Year:

2003

Language:

english

File:

PDF, 365 KB

english, 2003

39

Fluctuation domains in adaptive evolution

Carl Boettiger, Jonathan Dushoff, Joshua S. Weitz

Journal:

Theoretical Population Biology

Year:

2010

Language:

english

File:

PDF, 2.84 MB

english, 2010

40

Unsupervised statistical clustering of environmental shotgun sequences

Andrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff, Joshua S Weitz

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 872 KB

english, 2009

41

Bifurcation Analysis of Gene Regulatory Circuits Subject to Copy Number Variation

Mileyko, Yuriy, Weitz, Joshua S.

Journal:

SIAM Journal on Applied Dynamical Systems

Year:

2010

Language:

english

File:

PDF, 511 KB

english, 2010

42

Phage in the time of cholera

Joshua S Weitz, Hyman Hartman

Journal:

The Lancet Infectious Diseases

Year:

2006

Language:

english

File:

PDF, 39 KB

english, 2006

43

Testing the metabolic theory of ecology

Charles A. Price, Joshua S Weitz, Van M. Savage, James Stegen, Andrew Clarke, David A. Coomes, Peter S. Dodds, Rampal S. Etienne, Andrew J. Kerkhoff, Katherine McCulloh, Karl J. Niklas, Han Olff, Nath

Journal:

Ecology Letters

Year:

2012

Language:

english

File:

PDF, 190 KB

english, 2012

44

A neutral theory of genome evolution and the frequency distribution of genes

Haegeman, Bart, Weitz, Joshua S

Journal:

Year:

2012

Language:

english

File:

PDF, 333 KB

english, 2012

45

Collective Decision Making in Bacterial Viruses

Weitz, Joshua S., Mileyko, Yuriy, Joh, Richard I., Voit, Eberhard O.

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 173 KB

english, 2008

46

Robust estimation of microbial diversity in theory and in practice

Haegeman, Bart, Hamelin, Jérôme, Moriarty, John, Neal, Peter, Dushoff, Jonathan, Weitz, Joshua S

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 555 KB

english, 2013

47

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

Flores, Cesar O, Valverde, Sergi, Weitz, Joshua S

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 1.96 MB

english, 2013

48

Phage–bacteria infection networks

Weitz, Joshua S., Poisot, Timothée, Meyer, Justin R., Flores, Cesar O., Valverde, Sergi, Sullivan, Matthew B., Hochberg, Michael E.

Journal:

Trends in Microbiology

Year:

2013

Language:

english

File:

PDF, 725 KB

english, 2013

49

Mechanistic Insights from Animal Models of Psoriasis and Psoriatic Arthritis

Weitz, Joshua E., Ritchlin, Christopher T.

Journal:

Current Rheumatology Reports

Year:

2013

Language:

english

File:

PDF, 218 KB

english, 2013

50

Mechanisms of multi-strain coexistence in host–phage systems with nested infection networks

Jover, Luis F., Cortez, Michael H., Weitz, Joshua S.

Journal:

Journal of Theoretical Biology

Year:

2013

Language:

english

File:

PDF, 1.07 MB

english, 2013